PoplarV1, Main, Exploration, bibRecord, 001E60

Characterisation of the willow phenylalanine ammonia-lyase (PAL) gene family reveals expression differences compared with poplar.

Identifieur interne : 001E60 ( Main/Exploration ); précédent : 001E59; suivant : 001E61

Characterisation of the willow phenylalanine ammonia-lyase (PAL) gene family reveals expression differences compared with poplar.

Auteurs : Femke De Jong [Royaume-Uni] ; Steven J. Hanley [Royaume-Uni] ; Michael H. Beale [Royaume-Uni] ; Angela Karp [Royaume-Uni]

Source :

Phytochemistry [ 1873-3700 ] ; 2015.

RBID : pubmed:26070140

Descripteurs français

KwdFr :
- Coenzyme A ligases (métabolisme), Flavonoïdes (biosynthèse), Isoenzymes (MeSH), Lignine (métabolisme), Phenylalanine ammonia-lyase (génétique), Phenylalanine ammonia-lyase (métabolisme), Phénylalanine (métabolisme), Populus (enzymologie), Populus (génétique), Salicaceae (enzymologie), Salicaceae (génétique), Salix (enzymologie), Salix (génétique), Structure moléculaire (MeSH), Trans-cinnamate 4-monooxygenase (métabolisme).
MESH :
- biosynthèse : Flavonoïdes.
- enzymologie : Populus, Salicaceae, Salix.
- génétique : Phenylalanine ammonia-lyase, Populus, Salicaceae, Salix.
- métabolisme : Coenzyme A ligases, Lignine, Phenylalanine ammonia-lyase, Phénylalanine, Trans-cinnamate 4-monooxygenase.
- Isoenzymes, Structure moléculaire.

English descriptors

KwdEn :
- Coenzyme A Ligases (metabolism), Flavonoids (biosynthesis), Isoenzymes (MeSH), Lignin (metabolism), Molecular Structure (MeSH), Phenylalanine (metabolism), Phenylalanine Ammonia-Lyase (genetics), Phenylalanine Ammonia-Lyase (metabolism), Populus (enzymology), Populus (genetics), Salicaceae (enzymology), Salicaceae (genetics), Salix (enzymology), Salix (genetics), Trans-Cinnamate 4-Monooxygenase (metabolism).
MESH :
- chemical , biosynthesis : Flavonoids.
- chemical , genetics : Phenylalanine Ammonia-Lyase.
- chemical , metabolism : Coenzyme A Ligases, Lignin, Phenylalanine, Phenylalanine Ammonia-Lyase, Trans-Cinnamate 4-Monooxygenase.
- chemical : Isoenzymes.
- enzymology : Populus, Salicaceae, Salix.
- genetics : Populus, Salicaceae, Salix.
- Molecular Structure.

Abstract

Willow is an important biomass crop for the bioenergy industry, and therefore optimal growth with minimal effects of biotic and abiotic stress is essential. The phenylpropanoid pathway is responsible for the biosynthesis of not only lignin but also of flavonoids, condensed tannins, benzenoids and phenolic glycosides which all have a role in protecting the plant against biotic and abiotic stress. All products of the phenylpropanoid pathway are important for the healthy growth of short rotation cropping species such as willow. However, the phenylpropanoid pathway in willow remains largely uncharacterised. In the current study we identified and characterised five willow phenylalanine ammonia-lyase (PAL) genes, which encode enzymes that catalyse the deamination of l-phenylalanine to form trans-cinnamic acid, the entry point into the phenylpropanoid pathway. Willow PAL1, PAL2, PAL3 and PAL4 genes were orthologous to the poplar genes. However no orthologue of PAL5 appears to be present in willow. Moreover, two tandemly repeated PAL2 orthologues were identified in a single contig. Willow PALs show similar sub-cellular localisation to the poplar genes. However, the enzyme kinetics and gene expression of the willow PAL genes differed slightly, with willow PAL2 being more widely expressed than its poplar orthologues implying a wider role for PALs in the production of flavonoids, condensed tannins, benzenoids, and phenolic glycosides, in willow.

DOI: 10.1016/j.phytochem.2015.06.005
PubMed: 26070140
PubMed Central: PMC4560161

Affiliations:

Royaume-Uni

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Le document en format XML

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<term>Flavonoids (biosynthesis)</term>
<term>Isoenzymes (MeSH)</term>
<term>Lignin (metabolism)</term>
<term>Molecular Structure (MeSH)</term>
<term>Phenylalanine (metabolism)</term>
<term>Phenylalanine Ammonia-Lyase (genetics)</term>
<term>Phenylalanine Ammonia-Lyase (metabolism)</term>
<term>Populus (enzymology)</term>
<term>Populus (genetics)</term>
<term>Salicaceae (enzymology)</term>
<term>Salicaceae (genetics)</term>
<term>Salix (enzymology)</term>
<term>Salix (genetics)</term>
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<term>Flavonoïdes (biosynthèse)</term>
<term>Isoenzymes (MeSH)</term>
<term>Lignine (métabolisme)</term>
<term>Phenylalanine ammonia-lyase (génétique)</term>
<term>Phenylalanine ammonia-lyase (métabolisme)</term>
<term>Phénylalanine (métabolisme)</term>
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<term>Populus (génétique)</term>
<term>Salicaceae (enzymologie)</term>
<term>Salicaceae (génétique)</term>
<term>Salix (enzymologie)</term>
<term>Salix (génétique)</term>
<term>Structure moléculaire (MeSH)</term>
<term>Trans-cinnamate 4-monooxygenase (métabolisme)</term>
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<term>Lignin</term>
<term>Phenylalanine</term>
<term>Phenylalanine Ammonia-Lyase</term>
<term>Trans-Cinnamate 4-Monooxygenase</term>
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<term>Salicaceae</term>
<term>Salix</term>
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<keywords scheme="MESH" qualifier="enzymology" xml:lang="en"><term>Populus</term>
<term>Salicaceae</term>
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<term>Salicaceae</term>
<term>Salix</term>
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<term>Lignine</term>
<term>Phenylalanine ammonia-lyase</term>
<term>Phénylalanine</term>
<term>Trans-cinnamate 4-monooxygenase</term>
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<keywords scheme="MESH" xml:lang="en"><term>Molecular Structure</term>
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<front><div type="abstract" xml:lang="en">Willow is an important biomass crop for the bioenergy industry, and therefore optimal growth with minimal effects of biotic and abiotic stress is essential. The phenylpropanoid pathway is responsible for the biosynthesis of not only lignin but also of flavonoids, condensed tannins, benzenoids and phenolic glycosides which all have a role in protecting the plant against biotic and abiotic stress. All products of the phenylpropanoid pathway are important for the healthy growth of short rotation cropping species such as willow. However, the phenylpropanoid pathway in willow remains largely uncharacterised. In the current study we identified and characterised five willow phenylalanine ammonia-lyase (PAL) genes, which encode enzymes that catalyse the deamination of l-phenylalanine to form trans-cinnamic acid, the entry point into the phenylpropanoid pathway. Willow PAL1, PAL2, PAL3 and PAL4 genes were orthologous to the poplar genes. However no orthologue of PAL5 appears to be present in willow. Moreover, two tandemly repeated PAL2 orthologues were identified in a single contig. Willow PALs show similar sub-cellular localisation to the poplar genes. However, the enzyme kinetics and gene expression of the willow PAL genes differed slightly, with willow PAL2 being more widely expressed than its poplar orthologues implying a wider role for PALs in the production of flavonoids, condensed tannins, benzenoids, and phenolic glycosides, in willow. </div>
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<Abstract><AbstractText>Willow is an important biomass crop for the bioenergy industry, and therefore optimal growth with minimal effects of biotic and abiotic stress is essential. The phenylpropanoid pathway is responsible for the biosynthesis of not only lignin but also of flavonoids, condensed tannins, benzenoids and phenolic glycosides which all have a role in protecting the plant against biotic and abiotic stress. All products of the phenylpropanoid pathway are important for the healthy growth of short rotation cropping species such as willow. However, the phenylpropanoid pathway in willow remains largely uncharacterised. In the current study we identified and characterised five willow phenylalanine ammonia-lyase (PAL) genes, which encode enzymes that catalyse the deamination of l-phenylalanine to form trans-cinnamic acid, the entry point into the phenylpropanoid pathway. Willow PAL1, PAL2, PAL3 and PAL4 genes were orthologous to the poplar genes. However no orthologue of PAL5 appears to be present in willow. Moreover, two tandemly repeated PAL2 orthologues were identified in a single contig. Willow PALs show similar sub-cellular localisation to the poplar genes. However, the enzyme kinetics and gene expression of the willow PAL genes differed slightly, with willow PAL2 being more widely expressed than its poplar orthologues implying a wider role for PALs in the production of flavonoids, condensed tannins, benzenoids, and phenolic glycosides, in willow. </AbstractText>
<CopyrightInformation>Copyright © 2015 The Authors. Published by Elsevier Ltd.. All rights reserved.</CopyrightInformation>
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<ForeName>Femke</ForeName>
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<Keyword MajorTopicYN="N">Gene expression</Keyword>
<Keyword MajorTopicYN="N">Gene family</Keyword>
<Keyword MajorTopicYN="N">Phenylpropanoid metabolism</Keyword>
<Keyword MajorTopicYN="N">Salix viminalis (willow)</Keyword>
<Keyword MajorTopicYN="N">Subcellular localisation</Keyword>
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Characterisation of the willow phenylalanine ammonia-lyase (PAL) gene family reveals expression differences compared with poplar.

Characterisation of the willow phenylalanine ammonia-lyase (PAL) gene family reveals expression differences compared with poplar.

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